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The thesis is about analyzing cyber security level in the transportation systems, specifically installed in maritime ships. The M. Sc. project contributes to the project CyberShip, which run for 2 years. The thesis was supervised by professor Christian D. Jensen together with two PostDocs Rishikesh Sahay and Daniel Alberto Sepulveda Estay. Additionally, six companies co-operated within the project. In this thesis are placed findings of: