作者
James L McDonagh, Ardita Shkurti, David J Bray, Richard L Anderson, Edward O Pyzer-Knapp
发表日期
2019/9/24
期刊
Journal of chemical information and modeling
卷号
59
期号
10
页码范围
4278-4288
出版商
American Chemical Society
简介
We present a machine learning approach to automated force field development in dissipative particle dynamics (DPD). The approach employs Bayesian optimization to parametrize a DPD force field against experimentally determined partition coefficients. The optimization process covers a discrete space of over 40 000 000 points, where each point represents the set of potentials that jointly forms a force field. We find that Bayesian optimization is capable of reaching a force field of comparable performance to the current state-of-the-art within 40 iterations. The best iteration during the optimization achieves an R2 of 0.78 and an RMSE of 0.63 log units on the training set of data, these metrics are maintained when a validation set is included, giving R2 of 0.8 and an RMSE of 0.65 log units. This work hence provides a proof-of-concept, expounding the utility of coupling automated and efficient global optimization with …
引用总数
2019202020212022202320241998173
学术搜索中的文章
JL McDonagh, A Shkurti, DJ Bray, RL Anderson… - Journal of chemical information and modeling, 2019