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In recent years, considerable computational advancements have been made allowing automated analysis of behavioural endpoints using video cameras. However, the results of such analyses are often confounded by a large variation among individuals, making it problematic to derive endpoints that allow distinguishing treatment effects in behavioural studies. In this study, we quantitatively analysed the effects of light conditions on the swimming behaviour of the freshwater amphipod Gammarus pulex by high-throughput tracking, and attempted to unravel among individual variation using size and sex. For this, we developed the R-package Kinematics, allowing for the rapid and reproducible analysis of the swimming behaviour (speed, acceleration, thigmotaxis, curvature and startle response) of G. pulex, as well as any other organism. Our results show a considerable amount of variation among individuals (standard …