作者
Boqun Liu, Christoffer Åberg, Floris J van Eerden, Siewert J Marrink, Bert Poolman, Arnold J Boersma
发表日期
2017/5/9
期刊
Biophysical journal
卷号
112
期号
9
页码范围
1929-1939
出版商
Elsevier
简介
Cells are highly crowded with proteins and polynucleotides. Any reaction that depends on the available volume can be affected by macromolecular crowding, but the effects of crowding in cells are complex and difficult to track. Here, we present a set of Förster resonance energy transfer (FRET)-based crowding-sensitive probes and investigate the role of the linker design. We investigate the sensors in vitro and in vivo and by molecular dynamics simulations. We find that in vitro all the probes can be compressed by crowding, with a magnitude that increases with the probe size, the crowder concentration, and the crowder size. We capture the role of the linker in a heuristic scaling model, and we find that compression is a function of size of the probe and volume fraction of the crowder. The FRET changes observed in Escherichia coli are more complicated, where FRET-increases and scaling behavior are observed …
引用总数
2017201820192020202120222023202466151297106
学术搜索中的文章