作者
Kaveh Kavousi, Mojtaba Bagheri, Saman Behrouzi, Safar Vafadar, Fereshteh Fallah Atanaki, Bahareh Teimouri Lotfabadi, Shohreh Ariaeenejad, Abbas Shockravi, Ali Akbar Moosavi-Movahedi
发表日期
2020/9/18
期刊
Journal of Chemical Information and Modeling
卷号
60
期号
10
页码范围
4691-4701
出版商
American Chemical Society
简介
Antimicrobial peptides (AMPs) are at the focus of attention due to their therapeutic importance and developing computational tools for the identification of efficient antibiotics from the primary structure. Here, we utilized the 13CNMR spectral of amino acids and clustered them into various groups. These clusters were used to build feature vectors for the AMP sequences based on the composition, transition, and distribution of cluster members. These features, along with the physicochemical properties of AMPs were exploited to learn computational models to predict active AMPs solely from their sequences. Naïve Bayes (NB), k-nearest neighbors (KNN), support-vector machine (SVM), random forest (RF), and eXtreme Gradient Boosting (XGBoost) were employed to build the classification system using the collected AMP datasets from the CAMP, LAMP, ADAM, and AntiBP databases. Our results were validated and …
引用总数
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K Kavousi, M Bagheri, S Behrouzi, S Vafadar… - Journal of Chemical Information and Modeling, 2020