作者
Maxime Dhainaut, Samuel A Rose, Guray Akturk, Aleksandra Wroblewska, Sebastian R Nielsen, Eun Sook Park, Mark Buckup, Vladimir Roudko, Luisanna Pia, Robert Sweeney, Jessica Le Berichel, C Matthias Wilk, Anela Bektesevic, Brian H Lee, Nina Bhardwaj, Adeeb H Rahman, Alessia Baccarini, Sacha Gnjatic, Dana Pe’er, Miriam Merad, Brian D Brown
发表日期
2022/3/31
期刊
Cell
卷号
185
期号
7
页码范围
1223-1239. e20
出版商
Elsevier
简介
While CRISPR screens are helping uncover genes regulating many cell-intrinsic processes, existing approaches are suboptimal for identifying extracellular gene functions, particularly in the tissue context. Here, we developed an approach for spatial functional genomics called Perturb-map. We applied Perturb-map to knock out dozens of genes in parallel in a mouse model of lung cancer and simultaneously assessed how each knockout influenced tumor growth, histopathology, and immune composition. Moreover, we paired Perturb-map and spatial transcriptomics for unbiased analysis of CRISPR-edited tumors. We found that in Tgfbr2 knockout tumors, the tumor microenvironment (TME) was converted to a fibro-mucinous state, and T cells excluded, concomitant with upregulated TGFβ and TGFβ-mediated fibroblast activation, indicating that TGFβ-receptor loss on cancer cells increased TGFβ bioavailability and its …
引用总数
学术搜索中的文章