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Construction of dynamic models of large-scale metabolic networks is one of the central issues in the engineering of living cells. However, construction of such models is often hampered by a number of challenges, for example, data availability, compartmentalization and parameter identification coupled with design of in vivo perturbations. As a solution to the latter, short-term perturbation experiments are proposed and are proven to be a useful experimental method to obtain insights into the in vivo kinetic properties of the metabolic pathways.

The aim of this work is to construct a kinetic model using the available experimental data obtained by short-term perturbation experiments, where the steady state of a glucose-limited anaerobic chemostat culture of Saccharomyces cerevisiae was perturbed. In constructing the model, we first determined the steady-state flux distribution using the data before the glucose pulse and …