作者
Robert Lücking, Ba Vuong Truong, Dang Thi Thu Huong, Ngoc Han Le, Quoc Dat Nguyen, Van Dat Nguyen, Eckhard Von Raab-Straube, Sarah Bollendorff, Kim Govers, Vanessa Di Vincenzo
发表日期
2020/9
期刊
Willdenowia
卷号
50
期号
3
页码范围
383-403
出版商
Botanic Garden and Botanical Museum Berlin (BGBM)
简介
DNA barcoding using the nuclear internal transcribed spacer (ITS) has become prevalent in surveys of fungal diversity. This approach is, however, associated with numerous caveats, including the desire for speed, rather than accuracy, through the use of automated analytical pipelines, and the shortcomings of reference sequence repositories. Here we use the case of a specimen of the bracket fungus Trametes s.lat. (which includes the common and widespread turkey tail, T. versicolor) to illustrate these problems. The material was collected in Vietnam as part of a biodiversity inventory including DNA barcoding approaches for arthropods, plants and fungi. The ITS barcoding sequence of the query taxon was compared against reference sequences in GenBank and the curated fungal ITS database UNITE, using BLASTn and MegaBLAST, and was subsequently analysed in a multiple alignment-based phylogenetic …
引用总数
2020202120222023202411571