作者
Felix M Weidner, Julian D Schwab, Silke D Werle, Nensi Ikonomi, Ludwig Lausser, Hans A Kestler
发表日期
2021/10/15
期刊
Bioinformatics
卷号
37
期号
20
页码范围
3530-3537
出版商
Oxford University Press
简介
Motivation
Interaction graphs are able to describe regulatory dependencies between compounds without capturing dynamics. In contrast, mathematical models that are based on interaction graphs allow to investigate the dynamics of biological systems. However, since dynamic complexity of these models grows exponentially with their size, exhaustive analyses of the dynamics and consequently screening all possible interventions eventually becomes infeasible. Thus, we designed an approach to identify dynamically relevant compounds based on the static network topology.
Results
Here, we present a method only based on static properties to identify dynamically influencing nodes. Coupling vertex betweenness and determinative power, we could capture relevant nodes for changing dynamics with an accuracy of 75% in a set of 35 published logical models. Further analyses of …
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