作者
Govardhan A Balaji, HG Nagendra, Vitukudi N Balaji, Shashidhar N Rao
发表日期
2017/6
期刊
Proteins: Structure, Function, and Bioinformatics
卷号
85
期号
6
页码范围
979-1001
简介
We have presented an extensive analysis of the peptide backbone dihedral angles in the PDB structures and computed experimental Ramachandran plots for their distributions seen under a various constraints on X‐ray resolution, representativeness at different sequence identity percentages, and hydrogen bonding distances. These experimental distributions have been converted into isoenergy contour plots using the approach employed previously by F. M. Pohl. This has led to the identification of energetically favored minima in the Ramachandran (ϕ, ψ) plots in which global minima are predominantly observed either in the right‐handed α‐helical or the polyproline II regions. Further, we have identified low energy pathways for transitions between various minima in the (ϕ,ψ) plots. We have compared and presented the experimental plots with published theoretical plots obtained from both molecular mechanics …
引用总数
20182019202020212022202320244111211
学术搜索中的文章
GA Balaji, HG Nagendra, VN Balaji, SN Rao - Proteins: Structure, Function, and Bioinformatics, 2017