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Understanding how microbial communities are shaped across spatial dimensions is of fundamental importance in microbial ecology. However, most studies on soil biogeography have focused on the topsoil microbiome, while the factors driving the subsoil microbiome distribution are largely unknown. Here we used 16S rRNA amplicon sequencing to analyse the factors underlying the bacterial β‐diversity along vertical (0–240 cm of soil depth) and horizontal spatial dimensions (~500,000 km²) in the U.S. Corn Belt. With these data we tested whether the horizontal or vertical spatial variation had stronger impacts on the taxonomic (Bray‐Curtis) and phylogenetic (weighted Unifrac) β‐diversity. Additionally, we assessed whether the distance‐decay (horizontal dimension) was greater in the topsoil (0–30 cm) or subsoil (in each 30 cm layer from 30–240 cm) using Mantel tests. The influence of geographic distance …