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The rice–wheat cropping system, occupying 24 million hectares of the productive area in South Asia and China, is important for food security. Monitoring long-term changes in crop yields and identifying the factors associated with such changes are essential to maintain and/or improve crop productivity. Long-term experiments (LTE) provide these opportunities. We analyzed 33 rice–wheat LTE in the Indo-Gangetic Plains (IGP) of South Asia, non-IGP in India, and China to investigate the extent of yield stagnation or decline and identify possible causes of yield decline. In treatments where recommended rates of N, P and K were applied, yields of rice and wheat stagnated in 72 and 85% of the LTE, respectively, while 22 and 6% of the LTE showed a significant (P<0.05) declining trend for rice and wheat yields, respectively. In the rice–wheat system, particularly in the IGP, rice yields are declining more rapidly than wheat …