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Nitrate input to a river is largely controlled by land use in its catchment. We compared the information carried by the isotopic signatures of nitrate in 12 Baltic rivers, in relation to the vegetation cover, land use, and fertilization of agricultural land of their catchments. We found isotope values in nitrate ranging from −2 to 14‰ for δ¹⁵N and 8 to 25‰ for δ¹⁸O. The annual variability of riverine nitrate isotope signatures is presented in detail for one Nordic, the Kemijoki, and two southern rivers, the Vistula and Oder. Nordic rivers with relatively pristine vegetation in their catchments show not only low δ¹⁵N values and high δ¹⁸O-NO₃⁻ but also lower annual variability than rivers draining densely populated land. Seasonal signals were found in all the rivers. We used load weighted nitrate isotope data and data from the three major N sources (farmland/sewage, atmospheric deposition and from runoff of pristine soils) to theoretically estimate the shares of nitrate from these sources. The results of an isotope mixing model (IMM-1) agree reasonably well with the same estimates for agricultural land derived from a Global Land Cover (GLC) data base, with a deviation varying from −16% to +26%. The comparison with an emission model (EM) reveals relatively good agreements for intensively used catchments (−18 to +18% deviation). Rather unsatisfactory agreement was found between the IMM-1 and GLC calculations for pristine catchments (−36 to +50% deviation). Advantages and limitations of the tested model are discussed.