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Previous attempts to characterize shale gas transport in nanopores are not fully successful due to the fact that the presence of water within shale reservoirs is generally overlooked. In addition, shale is known as a wettability-varying (hydrophilic and hydrophobic) rock depending on various components and maturity grades. Herein, toward this end, we performed a comprehensive study about two-phase transport characteristic of shale gas and water through hydrophilic and hydrophobic nanopores by integrating the molecular dynamics (MD) simulations and analytical models. Using MD simulations, we showed that water molecules prefer to accumulate at the walls (water film) in hydrophilic nanopores while form the water cluster at the center region of hydrophobic nanopores, which significantly alters the shale gas transport behavior. For hydrophilic nanopores, the existence of water film weakens the gas–walls …