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Small, shallow, seasonal wetlands with short hydroperiod (2–4 months) play an important role in the entrapment of organic matter and nutrients and, due to their wide distribution, in determining the water quality of watersheds. In order to explain the temporal, spatial and compositional variation of water quality of seasonal wetlands, we collected water quality data from forty seasonal wetlands in the lower Blue Ridge and upper Piedmont ecoregions of South Carolina, USA during the wet season of February to April 2011. Results indicated that the surficial hydrological connectivity and surrounding land-use were two key factors controlling variation in dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) in these seasonal wetlands. In the sites without obvious land use changes (average developed area <0.1%), the DOC (p < 0.001, t-test) and TDN (p < 0.05, t-test) of isolated wetlands were significantly …