作者
Matthew A Wyczalkowski, Kristine M Wylie, Song Cao, Michael D McLellan, Jennifer Flynn, Mo Huang, Kai Ye, Xian Fan, Ken Chen, Michael C Wendl, Li Ding
发表日期
2017/6/5
期刊
Bioinformatics
卷号
33
期号
19
页码范围
3121-3122
出版商
Oxford University Press
简介
Summary
BreakPoint Surveyor (BPS) is a computational pipeline for the discovery, characterization, and visualization of complex genomic rearrangements, such as viral genome integration, in paired-end sequence data. BPS facilitates interpretation of structural variants by merging structural variant breakpoint predictions, gene exon structure, read depth, and RNA-sequencing expression into a single comprehensive figure.
Availability and implementation
Source code and sample data freely available for download at https://github.com/ding-lab/BreakPointSurveyor, distributed under the GNU GPLv3 license, implemented in R, Python and BASH scripts, and supported on Unix/Linux/OS X operating systems.
Supplementary information
Supplementary data are available at Bioinformatics online.
学术搜索中的文章
MA Wyczalkowski, KM Wylie, S Cao, MD McLellan… - Bioinformatics, 2017