作者
Debabani Ganguly, Chaitali Mukhopadhyay
发表日期
2007/7
期刊
Biopolymers: Original Research on Biomolecules
卷号
86
期号
4
页码范围
311-320
出版商
Wiley Subscription Services, Inc., A Wiley Company
简介
The plant lectin ricin B chain binds oligosaccharide with more affinity than the mono‐ or disaccharide ligands. The experiments indicated that a biantennary oligosaccharide could bind itself to any of the crystallographically established 1st or 2nd binding sites. After manual docking of either terminal galactose residues of the oligosaccharide in the 1st and 2nd binding sites of Ricin B and simulating the systems over nanosecond trajectories in implicit solvent, it was observed that the protein bound the oligosaccharide strongly through both its 1st and 2nd binding sites. Not only were the terminal galactose residues, several other residues of the oligosaccharide were involved in the binding scheme. Average gas phase energies were calculated molecular mechanically, solvation energies were calculated by Generalized Born model and the normal mode analysis was used to calculate the entropic contribution of binding …
引用总数
200820092010201120122013201420152016201711211
学术搜索中的文章
D Ganguly, C Mukhopadhyay - Biopolymers: Original Research on Biomolecules, 2007