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Lake Towuti on Sulawesi Island, Indonesia, is located within the heart of the Indo‐Pacific Warm Pool. This tropical lake is surrounded by ultramafic (ophiolitic) rocks and lateritic soils that create a unique ferruginous depositional setting. In order to understand modern sediment deposition in Lake Towuti, a set of 84 lake surface sediment samples was collected from across the entirety of the lake and samples were analyzed for their physical, chemical, mineralogical and biological constituents. End‐member analyses were carried out to elucidate modern sediment origin, transport and depositional processes. This study found that allochthonous sediment, characterized by the concentrations of the elements Mg, Fe, Si and Al, as well as the clay and serpentine minerals, is dominated by fluvial supply from five distinct source areas. Granulometric data and the occurrence of organic matter of a terrestrial origin suggest that …