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Phase transformation and optical properties of silica (silicon dioxide, SiO₂) quartz sand under high pressure/temperature has been of interest in geology and optical physics for many years. In this study, besides high pressure/temperature, high plastic strain is simultaneously applied to the quartz sand by high‐pressure torsion (HPT) processing. The material shows oxygen vacancy formation and transformation to (a) a denser nanocrystalline quartz phase, (b) a high‐temperature amorphous phase and (c) a high‐pressure coesite phase. These structural and microstructural changes lead to light absorbance, electron spin resonance, photoluminscence and photocatalytic activity, while these changes are enhanced by increasing strain. This study introduces a possible pressure‐temperature‐strain‐based mechanism for the formation of naturally observed vacancies and coesite phase in SiO₂‐based minerals and sands.