作者
Jorge A Vila, Yelena A Arnautova, Osvaldo A Martin, Harold A Scheraga
发表日期
2009/10/6
期刊
Proceedings of the National Academy of Sciences
卷号
106
期号
40
页码范围
16972-16977
出版商
National Academy of Sciences
简介
A server (CheShift) has been developed to predict 13Cα chemical shifts of protein structures. It is based on the generation of 696,916 conformations as a function of the φ, ψ, ω, χ1 and χ2 torsional angles for all 20 naturally occurring amino acids. Their 13Cα chemical shifts were computed at the DFT level of theory with a small basis set and extrapolated, with an empirically-determined linear regression formula, to reproduce the values obtained with a larger basis set. Analysis of the accuracy and sensitivity of the CheShift predictions, in terms of both the correlation coefficient R and the conformational-averaged rmsd between the observed and predicted 13Cα chemical shifts, was carried out for 3 sets of conformations: (i) 36 x-ray-derived protein structures solved at 2.3 Å or better resolution, for which sets of 13Cα chemical shifts were available; (ii) 15 pairs of x-ray and NMR-derived sets of protein conformations; and …
引用总数
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学术搜索中的文章
JA Vila, YA Arnautova, OA Martin, HA Scheraga - Proceedings of the National Academy of Sciences, 2009