作者
Jorge A Vila, James M Aramini, Paolo Rossi, Alexandre Kuzin, Min Su, Jayaraman Seetharaman, Rong Xiao, Liang Tong, Gaetano T Montelione, Harold A Scheraga
发表日期
2008/9/23
期刊
Proceedings of the National Academy of Sciences
卷号
105
期号
38
页码范围
14389-14394
出版商
National Academy of Sciences
简介
A recently determined set of 20 NMR-derived conformations of a 48-residue all-α-helical protein, (PDB ID code 2JVD), is validated here by comparing the observed 13Cα chemical shifts with those computed at the density functional level of theory. In addition, a recently introduced physics-based method, aimed at determining protein structures by using NOE-derived distance constraints together with observed and computed 13Cα chemical shifts, was applied to determine a new set of 10 conformations, (Set-bt), as a blind test for the same protein. A cross-validation of these two sets of conformations in terms of the agreement between computed and observed 13Cα chemical shifts, several stereochemical quality factors, and some NMR quality assessment scores reveals the good quality of both sets of structures. We also carried out an analysis of the agreement between the observed and computed 13Cα chemical …
引用总数
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