作者
Akbar Nayeem, Jorge Vila, Harold A Scheraga
发表日期
1991/6
期刊
Journal of Computational Chemistry
卷号
12
期号
5
页码范围
594-605
出版商
John Wiley & Sons, Inc.
简介
A comparison of two methods for surmounting the multiple‐minima problem, Simulated Annealing (SA) and Monte Carlo with Minimization (MCM), is presented with applications to [Met]‐enkephalin in the absence and in the presence of water. SA explores a continuous space of internal variables, while MCM explores a discrete space consisting of the local energy minima on that space. Starting from random conformations chosen from the whole conformational space in both cases, it is found that, while SA converges to low‐energy structures significantly faster than MCM, the former does not converge to a unique minimum whereas the latter does. Furthermore, the behavior of the RMS deviations with respect to the apparent global minimum (for enkephalin in the absence of water) shows no correlation with the observed overall energy decrease in the case of SA, whereas such a correlation is quite evident with MCM …
引用总数
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