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New sedimentological, micropaleontological and geochemical data from the Upper Miocene pre-evaporitic sedimentary sequence of the Faneromeni section (Crete Island, eastern Mediterranean) revealed a stepwise restriction of the Mediterranean Sea preceding the Messinian Salinity Crisis (MSC), which was modulated by a sedimentary cyclicity responding to orbital parameters. This cyclicity is manifested by lithological alternations from laminated to indurated homogeneous marls and clayey limestones, and covers the Tortonian-Messinian Transition (TMT; 7.6–6.7 Ma). This time window covers the successive closure of the marine Mediterranean-Atlantic gateways, which culminated in the onset of the MSC. In the present study, we present the first evidence for changes in the upper water column reflected by sea surface temperature (SST) and salinity (SSS) variations that correlate with pronounced paleoclimatic …