作者
Aalt DJ van Dijk, David Fushman, Alexandre MJJ Bonvin
发表日期
2005/8/15
期刊
Proteins: Structure, Function, and Bioinformatics
卷号
60
期号
3
页码范围
367-381
出版商
Wiley Subscription Services, Inc., A Wiley Company
简介
ABSTRACT When classical, Nuclear Overhauser Effect (NOE)-based approaches fail, it is possible, given high-resolution structures of the free molecules, to model the structure of a complex in solution based solely on chemical shift perturbation (CSP) data in combination with orientational restraints from residual dipolar couplings (RDCs) when available. RDCs can be incorporated into the docking following various strategies: as direct restraints and/or as intermolecular intervector projection angle restraints (Meiler et al., J Biomol NMR 2000; 16: 245–252). The advantage of the latter for docking is that they directly define the relative orientation of the molecules. A combined protocol in which RDCs are first introduced as intervector projection angle restraints and at a later stage as direct restraints is shown here to give the best performance. This approach, implemented in our information-driven docking approach …
引用总数
20052006200720082009201020112012201320142015201620172018201920202021202220233811741010116646228311