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Lipid biomarkers in stalagmites have potential in palaeoenvironmental reconstruction, but glycerol dialkyl glycerol tetraethers (GDGTs) in stalagmites have rarely been investigated. We report the occurrence of archaeal isoprenoid GDGTs and bacterial branched GDGTs in Heshang Cave stalagmites in central China. The archaeal component, crenarchaeol, dominated bacterial branched GDGTs in the stalagmites and on the weathered parent rock surface collected inside the cave. In contrast, the distribution of GDGTs in the overlying soil shows that branched GDGTs dominated archaeal GDGTs. Hence, the majority of archaeal GDGTs in stalagmites may be produced by Crenarchaeota inhabiting the cave rather than being inherited from the overlying soil. Bacterial branched GDGT distributions, expressed as MBT and CBT indices, showed remarkable differences between stalagmite and soil samples, implying that …