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Rapid life‐history changes caused by size‐selective harvesting are often interpreted as a response to direct harvest selection against a large body size. However, similar trait changes may result from a harvest‐induced relaxation of natural selection for a large body size via density‐dependent selection. Here, we show evidence of such density‐dependent selection favouring large‐bodied individuals at high population densities, in replicated pond populations of medaka fish. Harvesting, in contrast, selected medaka directly against a large body size and, in parallel, decreased medaka population densities. Five years of harvesting were enough for harvested and unharvested medaka populations to inherit the classically predicted trait differences, whereby harvested medaka grew slower and matured earlier than unharvested medaka. We show that this life‐history divergence was not driven by direct harvest selection …