作者
Brajesh K Rai, Vishnu Sresht, Qingyi Yang, Ray Unwalla, Meihua Tu, Alan M Mathiowetz, Gregory A Bakken
发表日期
2019/10/1
期刊
Journal of chemical information and modeling
卷号
59
期号
10
页码范围
4195-4208
出版商
American Chemical Society
简介
The energetics of rotation around single bonds (torsions) is a key determinant of the three-dimensional shape that druglike molecules adopt in solution, the solid state, and in different biological environments, which in turn defines their unique physical and pharmacological properties. Therefore, accurate characterization of torsion angle preference and energetics is essential for the success of computational drug discovery and design. Here, we analyze torsional strain in crystal structures of druglike molecules in Cambridge structure database (CSD) and bioactive ligand conformations in protein data bank (PDB), expressing the total strain energy as a sum of strain energy from constituent rotatable bonds. We utilized cloud computing to generate torsion scan profiles of a very large collection of chemically diverse neutral fragments at DFT(B3LYP)/6-31G*//6-31G** or DFT(B3LYP)/6-31+G*//6-31+G** (for sulfur …
引用总数
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