作者
David Danko, Daniela Bezdan, Evan E Afshin, Sofia Ahsanuddin, Chandrima Bhattacharya, Daniel J Butler, Kern Rei Chng, Daisy Donnellan, Jochen Hecht, Katelyn Jackson, Katerina Kuchin, Mikhail Karasikov, Abigail Lyons, Lauren Mak, Dmitry Meleshko, Harun Mustafa, Beth Mutai, Russell Y Neches, Amanda Ng, Olga Nikolayeva, Tatyana Nikolayeva, Eileen Png, Krista A Ryon, Jorge L Sanchez, Heba Shaaban, Maria A Sierra, Dominique Thomas, Ben Young, Omar O Abudayyeh, Josue Alicea, Malay Bhattacharyya, Ran Blekhman, Eduardo Castro-Nallar, Ana M Cañas, Aspassia D Chatziefthimiou, Robert W Crawford, Francesca De Filippis, Youping Deng, Christelle Desnues, Emmanuel Dias-Neto, Marius Dybwad, Eran Elhaik, Danilo Ercolini, Alina Frolova, Dennis Gankin, Jonathan S Gootenberg, Alexandra B Graf, David C Green, Iman Hajirasouliha, Jaden JA Hastings, Mark Hernandez, Gregorio Iraola, Soojin Jang, Andre Kahles, Frank J Kelly, Kaymisha Knights, Nikos C Kyrpides, Paweł P Łabaj, Patrick KH Lee, Marcus HY Leung, Per O Ljungdahl, Gabriella Mason-Buck, Ken McGrath, Cem Meydan, Emmanuel F Mongodin, Milton Ozorio Moraes, Niranjan Nagarajan, Marina Nieto-Caballero, Houtan Noushmehr, Manuela Oliveira, Stephan Ossowski, Olayinka O Osuolale, Orhan Özcan, David Paez-Espino, Nicolás Rascovan, Hugues Richard, Gunnar Rätsch, Lynn M Schriml, Torsten Semmler, Osman U Sezerman, Leming Shi, Tieliu Shi, Rania Siam, Haruo Suzuki, Scott W Tighe, Xinzhao Tong, Klas I Udekwu, Juan A Ugalde, Brandon Valentine, Dimitar I Vassilev, Elena M Vayndorf, Thirumalaisamy P Velavan, Jun Wu, María M Zambrano, Jifeng Zhu, Sibo Zhu, Christopher E Mason, Natasha Abdullah, Marcos Abraao, Ait-hamlat Adel, Muhammad Afaq, Faisal S Al-Quaddoomi, Ireen Alam, Gabriela E Albuquerque, Alex Alexiev, Kalyn Ali, Lucia E Alvarado-Arnez, Sarh Aly, Jennifer Amachee, Maria G Amorim, Majelia Ampadu, Muhammad Al-Fath Amran, Nala An, Watson Andrew, Harilanto Andrianjakarivony, Michael Angelov, Verónica Antelo, Catharine Aquino, Álvaro Aranguren, Luiza F Araujo, Hitler Francois Vasquez Arevalo, Jenny Arevalo, Carme Arnan, Lucia Elena Alvarado Arnez, Fernanda Arredondo, Matthew Arthur, Freddy Asenjo, Thomas Saw Aung, Juliette Auvinet, Nuria Aventin, Sadaf Ayaz, Silva Baburyan, Abd-Manaaf Bakere, Katrin Bakhl, Thais F Bartelli, Erdenetsetseg Batdelger, François Baudon, Kevin Becher, Carla Bello, Médine Benchouaia, Hannah Benisty, Anne-Sophie Benoiston, Joseph Benson, Diego Benítez, Juliana Bernardes, Denis Bertrand, Silvia Beurmann, Tristan Bitard-Feildel, Lucie Bittner, Christina Black
发表日期
2021/6/24
期刊
Cell
卷号
184
期号
13
页码范围
3376-3393. e17
出版商
Elsevier
简介
We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of …
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