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Background: Cell-free miRNAs (cf-miRNA), circulated in body fluids such as plasma or serum, have shown their ability to detect, diagnose, and monitor cancers. Combining machine learning (ML) technology with these biomarkers facilitates early detection of cancers, which increases the accuracy of clinical decisions and empowers people to take control of their health status. However, the data of the cf-miRNAs has characteristics, which will affect the results of ML. Therefore, this study tries to expound on them in different aspects and to build a reasonable model. Methods: We downloaded large-scale datasets of the platform GPL21263 from the Gene Expression Omnibus for modeling experiments. We curated 8,174 subjects with 2,565 miRNA targets across 7 cancer types of different cf-miRNA-based cancer studies. Moreover, we used principal component analysis (PCA) to observe the datasets, recursive …