作者
Daria Ostroverkhova, Kathryn Tyryshkin, Annette K Beach, Elizabeth A Moore, Yosef Masoudi-Sobhanzadeh, Stephanie R Barbari, Igor B Rogozin, Konstantin V Shaitan, Anna R Panchenko, Polina V Shcherbakova
发表日期
2024/3/1
期刊
Clinical Cancer Research
卷号
30
期号
5_Supplement
页码范围
IA021-IA021
出版商
The American Association for Cancer Research
简介
Alterations in the exonuclease domain of POLE drive the development of ultramutated endometrial tumors with better prognosis. A hallmark of these tumors is the accumulation of G>T mutations in AGA sequences; however, understanding of their genomic features beyond the trinucleotide motifs is limited. We applied a novel computational framework to the whole-exome sequencing data of 524 endometrial tumors reported by The Cancer Genome Atlas network to analyze the extended DNA sequence context of ultramutation. We found that the presence of POLE driver alleles is associated with an increased frequency of G>T mutations in polypurine tracts. Sequences containing three consecutive purines, including the classic AGA context, are only moderately mutable, but the mutability increased abruptly as the tract length reached six or more purines. Moreover, mutations showed a strong preference for certain …
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