作者
Julie Jeukens, Iréna Kukavica-Ibrulj, Jean-Guillaume Emond-Rheault, Luca Freschi, RC Levesque
发表日期
2017/9
期刊
FEMS Microbiology Letters
卷号
364
期号
18
页码范围
fnx161
出版商
Oxford University Press
简介
Antimicrobial resistance (AMR) is now recognized as a global threat to human health. The accessibility of microbial whole-genome sequencing offers an invaluable opportunity for resistance surveillance via the resistome, i.e. the genes and mutations underlying AMR. Unfortunately, AMR prediction from genomic data remains extremely challenging, especially for species with a large pan-genome. One such organism, for which multidrug-resistant (MDR) isolates are frequently encountered in the clinic, is Pseudomonas aeruginosa. This study focuses on a commercially available panel of seven MDR P. aeruginosa strains. The main goals were to sequence and compare these strains’ genomes, attempt to predict AMR from whole genomes using two different methods and determine whether this panel could be an informative complement to the international P. aeruginosa reference panel. As expected, the results …
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