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Non‐point source pollution is a key issue in integrated river basin management around the world and has resulted in water contamination, aquatic ecology deterioration and eutrophication. Xin'anjiang catchment is the key drinking water source area for Hangzhou City, China. A promising model (Soil and Water Assessment Tool) was applied to assess the non‐point source pollution and its effect on drinking water. Sensitivity analysis of model parameters was carried out using the Sequential Uncertainty Domain Parameter Fitting 2 sensitivity technique. Water discharge, sediment, total nitrogen and total phosphorus load processes from 2000 to 2010 were simulated, and the spatial distributions of non‐point source pollutants were evaluated at the catchment and administrative country levels. The results show that the hydrological parameters of the Soil and Water Assessment Tool were dominantly sensitive for non …