作者
Robert D Stewart, Marc D Auffret, Amanda Warr, Andrew H Wiser, Maximilian O Press, Kyle W Langford, Ivan Liachko, Timothy J Snelling, Richard J Dewhurst, Alan W Walker, Rainer Roehe, Mick Watson
发表日期
2018/2/28
期刊
Nature communications
卷号
9
期号
1
页码范围
870
出版商
Nature Publishing Group UK
简介
The cow rumen is adapted for the breakdown of plant material into energy and nutrients, a task largely performed by enzymes encoded by the rumen microbiome. Here we present 913 draft bacterial and archaeal genomes assembled from over 800 Gb of rumen metagenomic sequence data derived from 43 Scottish cattle, using both metagenomic binning and Hi-C-based proximity-guided assembly. Most of these genomes represent previously unsequenced strains and species. The draft genomes contain over 69,000 proteins predicted to be involved in carbohydrate metabolism, over 90% of which do not have a good match in public databases. Inclusion of the 913 genomes presented here improves metagenomic read classification by sevenfold against our own data, and by fivefold against other publicly available rumen datasets. Thus, our dataset substantially improves the coverage of rumen microbial genomes …
引用总数
201820192020202120222023202427839891796730
学术搜索中的文章
RD Stewart, MD Auffret, A Warr, AH Wiser, MO Press… - Nature communications, 2018