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Environmental context Estuaries play an important role in global carbon cycling in terms of transforming dissolved organic matter (DOM). We describe the molecular composition and spatial distribution of DOM in the Pearl River Estuary, an area severely impacted by anthropogenic activities, and show how DOM composition gradually changes with salinity. The results will help our understanding of the sources and transformations of anthropogenic DOM discharged to the coastal seas. Abstract The Pearl River is the second-largest river in China in terms of water discharge and brings enormous amounts of nutrients and terrestrial organic matter to the South China Sea, which makes the Pearl River Estuary (PRE) highly eutrophic. However, the molecular composition and distribution of dissolved organic matter (DOM) in the PRE have scarcely been investigated. In this study, solid-phase extraction (SPE) was performed …