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Effect of organic acids (acetic, citric, and lactic; 100 mM, pH 5) on spore inactivation by pressure‐assisted thermal processing (PATP; 700 MPa and 105 °C), high pressure processing (HPP; 700 MPa, 35 °C), and thermal processing (TP; 105 °C, 0.1 MPa) was investigated. Bacillus amyloliquefaciens spores were inoculated into sterile organic acid solutions to obtain a final concentration of approximately 1.3 × 10⁸ CFU/mL. B. amyloliquefaciens spores were inactivated to undetectable levels with or without organic acids after 3 min PATP holding time. At a shorter PATP treatment time (approximately 2 min), the inactivation was greater when spores were suspended in citric and acetic acids than in lactic acid or deionized water. Presence of organic acids during PATP resulted in 33% to 80% germination in the population of spores that survived the treatment. In contrast to PATP, neither HPP nor TP, for up to 5 min …