作者
Anna Rice, Lior Glick, Shiran Abadi, Moshe Einhorn, Naama M Kopelman, Ayelet Salman-Minkov, Jonathan Mayzel, Ofer Chay, Itay Mayrose
发表日期
2017
期刊
Learning Evolutionary and Genomic Processes from Massive Nucleotide Data
卷号
13
期号
10
页码范围
116
简介
For nearly a century, biologists, and botanists in particular, have been interested in the determination and documentation of chromosome numbers for extant taxa (reviewed in Goldblatt & Lowry, 2011) as well as extinct ones (Laane & Hoiland, 1986; Masterson, 1994). These data have been widely used to evaluate the evolutionary pattern of chromosome number change and to estimate the base chromosome number of clades of interest. Chromosome numbers have also been extensively utilized as an important phylogenetic character in the context of cytotaxonomy (Chatterjee & Kumar Sharma, 1969; Schlarbaum & Tsuchiya, 1984; Guerra, 2012). Perhaps the most influential use of chromosome number data has been in the inference of major genomic events such as whole genome duplications (polyploidy), as well as changes in single chromosome numbers (eg dysploidy). Early researchers analyzed the distribution of chromosome numbers within a group of interest and employed various threshold techniques to estimate ploidy levels for the analyzed taxa (Stebbins, 1938; Grant, 1963; Goldblatt, 1980). More recently, phylogenetic information was incorporated into the analyses, allowing researchers to infer transitions in chromosome numbers along branches of the tree using either the maximum parsimony principle (Schultheis, 2001; Hansen et al., 2006; Ohi-Toma et al., 2006; Wood et al., 2009) or by using a probabilistic evolutionary model within the likelihood paradigm (Mayrose et al., 2010; Cusimano et al., 2012; Glick & Mayrose, 2014). Due to their significance and the relative ease by which chromosome numbers can be obtained, it is not …
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A Rice, L Glick, S Abadi, M Einhorn, NM Kopelman… - Learning Evolutionary and Genomic Processes from …, 2017