作者
Richard Owczarzy, Yong You, Bernardo G Moreira, Jeffrey A Manthey, Lingyan Huang, Mark A Behlke, Joseph A Walder
发表日期
2004/3/30
期刊
Biochemistry
卷号
43
期号
12
页码范围
3537-3554
出版商
American Chemical Society
简介
Melting temperatures, Tm, were systematically studied for a set of 92 DNA duplex oligomers in a variety of sodium ion concentrations ranging from 69 mM to 1.02 M. The relationship between Tm and ln [Na+] was nonlinear over this range of sodium ion concentrations, and the observed melting temperatures were poorly predicted by existing algorithms. A new empirical relationship was derived from UV melting data that employs a quadratic function, which better models the melting temperatures of DNA duplex oligomers as sodium ion concentration is varied. Statistical analysis shows that this improved salt correction is significantly more accurate than previously suggested algorithms and predicts salt-corrected melting temperatures with an average error of only 1.6 °C when tested against an independent validation set of Tm measurements obtained from the literature. Differential scanning calorimetry studies …
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