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Overall, viral metagenomics was successfully used to detect and characterise the viromes of important vectors (mosquitoes and ticks) from Mozambique. All the viral sequences identified from this study were divergent from previously known viruses and potentially represent novel viruses that are circulating in the Zambezi Valley of Mozambique. These results constitute the basis for further studies on viruses that are circulating in vectors and on the evolution, viral maintenance and transmission of pathogenic arboviruses.