作者
Peter A Szabo, Hanna Mendes Levitin, Michelle Miron, Mark E Snyder, Takashi Senda, Jinzhou Yuan, Yim Ling Cheng, Erin C Bush, Pranay Dogra, Puspa Thapa, Donna L Farber, Peter A Sims
发表日期
2019/10/17
期刊
Nature communications
卷号
10
期号
1
页码范围
4706
出版商
Nature Publishing Group UK
简介
Human T cells coordinate adaptive immunity in diverse anatomic compartments through production of cytokines and effector molecules, but it is unclear how tissue site influences T cell persistence and function. Here, we use single cell RNA-sequencing (scRNA-seq) to define the heterogeneity of human T cells isolated from lungs, lymph nodes, bone marrow and blood, and their functional responses following stimulation. Through analysis of >50,000 resting and activated T cells, we reveal tissue T cell signatures in mucosal and lymphoid sites, and lineage-specific activation states across all sites including distinct effector states for CD8+ T cells and an interferon-response state for CD4+ T cells. Comparing scRNA-seq profiles of tumor-associated T cells to our dataset reveals predominant activated CD8+ compared to CD4+ T cell states within multiple tumor types. Our results therefore establish a high dimensional …
引用总数
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