标题/作者	年份
Cellpose: a generalist algorithm for cellular segmentation C Stringer, T Wang, M Michaelos, M Pachitariu Nature methods 18 (1), 100-106	2021
Deep learning for cellular image analysis E Moen, D Bannon, T Kudo, W Graf, M Covert, D Van Valen Nature methods 16 (12), 1233-1246	2019
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse Nature 583 (7817), 590-595	2020
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl JC Caicedo, A Goodman, KW Karhohs, BA Cimini, J Ackerman, ... Nature methods 16 (12), 1247-1253	2019
Plasticity of ether lipids promotes ferroptosis susceptibility and evasion Y Zou, WS Henry, EL Ricq, ET Graham, VV Phadnis, P Maretich, ... Nature 585 (7826), 603-608	2020
Software tools for automated transmission electron microscopy M Schorb, I Haberbosch, WJH Hagen, Y Schwab, DN Mastronarde Nature methods 16 (6), 471-477	2019
CellProfiler 4: improvements in speed, utility and usability DR Stirling, MJ Swain-Bowden, AM Lucas, AE Carpenter, BA Cimini, ... BMC bioinformatics 22, 1-11	2021
Evaluation of deep learning strategies for nucleus segmentation in fluorescence images JC Caicedo, J Roth, A Goodman, T Becker, KW Karhohs, M Broisin, ... Cytometry Part A 95 (9), 952-965	2019
Democratising deep learning for microscopy with ZeroCostDL4Mic L von Chamier, RF Laine, J Jukkala, C Spahn, D Krentzel, E Nehme, ... Nature communications 12 (1), 2276	2021
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues JY Kishi, SW Lapan, BJ Beliveau, ER West, A Zhu, HM Sasaki, SK Saka, ... Nature methods 16 (6), 533-544	2019
Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning NF Greenwald, G Miller, E Moen, A Kong, A Kagel, T Dougherty, ... Nature biotechnology 40 (4), 555-565	2022
Tutorial: guidance for quantitative confocal microscopy J Jonkman, CM Brown, GD Wright, KI Anderson, AJ North Nature protocols 15 (5), 1585-1611	2020
The spatial landscape of lung pathology during COVID-19 progression AF Rendeiro, H Ravichandran, Y Bram, V Chandar, J Kim, C Meydan, ... Nature 593 (7860), 564-569	2021
Mask-RCNN and U-net ensembled for nuclei segmentation AO Vuola, SU Akram, J Kannala 2019 IEEE 16th international symposium on biomedical imaging (ISBI 2019 …	2019
Local externalization of phosphatidylserine mediates developmental synaptic pruning by microglia N Scott‐Hewitt, F Perrucci, R Morini, M Erreni, M Mahoney, A Witkowska, ... The EMBO journal 39 (16), e105380	2020
Mitochondrial DNA drives abscopal responses to radiation that are inhibited by autophagy T Yamazaki, A Kirchmair, AI Sato, A Buqué, M Rybstein, G Petroni, N Bloy, ... Nature immunology 21 (10), 1160-1171	2020
Deep spatial profiling of human COVID-19 brains reveals neuroinflammation with distinct microanatomical microglia-T-cell interactions M Schwabenland, H Salié, J Tanevski, S Killmer, MS Lago, AE Schlaak, ... Immunity 54 (7), 1594-1610. e11	2021
Image-based profiling for drug discovery: due for a machine-learning upgrade? SN Chandrasekaran, H Ceulemans, JD Boyd, AE Carpenter Nature Reviews Drug Discovery 20 (2), 145-159	2021
Targeting transcriptional regulation of SARS-CoV-2 entry factors ACE2 and TMPRSS2 Y Qiao, XM Wang, R Mannan, S Pitchiaya, Y Zhang, JW Wotring, L Xiao, ... Proceedings of the National Academy of Sciences 118 (1), e2021450118	2021
Morphological cell profiling of SARS-CoV-2 infection identifies drug repurposing candidates for COVID-19 C Mirabelli, JW Wotring, CJ Zhang, SM McCarty, R Fursmidt, CD Pretto, ... Proceedings of the National Academy of Sciences 118 (36), e2105815118	2021

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