Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia JM Aury, O Jaillon, L Duret, B Noel, C Jubin, BM Porcel, B Ségurens, ... Nature 444 (7116), 171-178, 2006 | 917 | 2006 |
From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria E Lerat, V Daubin, NA Moran PLoS biology 1 (1), e19, 2003 | 525 | 2003 |
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography P Normand, P Lapierre, LS Tisa, JP Gogarten, N Alloisio, E Bagnarol, ... Genome research 17 (1), 7-15, 2007 | 418 | 2007 |
Evolutionary origins of genomic repertoires in bacteria E Lerat, V Daubin, H Ochman, NA Moran PLoS biology 3 (5), e130, 2005 | 398 | 2005 |
A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history V Daubin, M Gouy, G Perriere Genome research 12 (7), 1080-1090, 2002 | 375 | 2002 |
Phylogenetics and the cohesion of bacterial genomes V Daubin, NA Moran, H Ochman Science 301 (5634), 829-832, 2003 | 330 | 2003 |
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli V Daubin, H Ochman Genome research 14 (6), 1036-1042, 2004 | 324 | 2004 |
Genome-scale coestimation of species and gene trees B Boussau, GJ Szöllősi, L Duret, M Gouy, E Tannier, V Daubin Genome research 23 (2), 323-330, 2013 | 298 | 2013 |
Examining bacterial species under the specter of gene transfer and exchange H Ochman, E Lerat, V Daubin Proceedings of the National Academy of Sciences 102 (suppl_1), 6595-6599, 2005 | 273 | 2005 |
The inference of gene trees with species trees GJ Szöllősi, E Tannier, V Daubin, B Boussau Systematic biology 64 (1), e42-e62, 2015 | 269 | 2015 |
Dealing with incongruence in phylogenomic analyses N Galtier, V Daubin Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008 | 249 | 2008 |
GC-content evolution in bacterial genomes: the biased gene conversion hypothesis expands F Lassalle, S Périan, T Bataillon, X Nesme, L Duret, V Daubin PLoS genetics 11 (2), e1004941, 2015 | 230 | 2015 |
The source of laterally transferred genes in bacterial genomes V Daubin, E Lerat, G Perrière Genome biology 4, 1-12, 2003 | 226 | 2003 |
Efficient exploration of the space of reconciled gene trees GJ Szöllősi, W Rosikiewicz, B Boussau, E Tannier, V Daubin Systematic biology 62 (6), 901-912, 2013 | 204 | 2013 |
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? S Gribaldo, AM Poole, V Daubin, P Forterre, C Brochier-Armanet Nature Reviews Microbiology 8 (10), 743-752, 2010 | 193 | 2010 |
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations GJ Szöllősi, B Boussau, SS Abby, E Tannier, V Daubin Proceedings of the national academy of sciences 109 (43), 17513-17518, 2012 | 188 | 2012 |
Databases of homologous gene families for comparative genomics S Penel, AM Arigon, JF Dufayard, AS Sertier, V Daubin, L Duret, M Gouy, ... BMC bioinformatics 10, 1-13, 2009 | 186 | 2009 |
Models, algorithms and programs for phylogeny reconciliation JP Doyon, V Ranwez, V Daubin, V Berry Briefings in bioinformatics 12 (5), 392-400, 2011 | 184 | 2011 |
Reductive genome evolution at both ends of the bacterial population size spectrum B Batut, C Knibbe, G Marais, V Daubin Nature Reviews Microbiology 12 (12), 841-850, 2014 | 167 | 2014 |
Lateral gene transfer as a support for the tree of life SS Abby, E Tannier, M Gouy, V Daubin Proceedings of the National Academy of Sciences 109 (13), 4962-4967, 2012 | 148 | 2012 |