Single-molecule transition-state analysis of RNA folding G Bokinsky, D Rueda, VK Misra, MM Rhodes, A Gordus, HP Babcock, ... Proceedings of the National Academy of Sciences 100 (16), 9302-9307, 2003 | 268 | 2003 |
Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells A Autour, S CY Jeng, A D. Cawte, A Abdolahzadeh, A Galli, ... Nature communications 9 (1), 656, 2018 | 225 | 2018 |
Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance D Rueda, G Bokinsky, MM Rhodes, MJ Rust, X Zhuang, NG Walter Proceedings of the National Academy of Sciences 101 (27), 10066-10071, 2004 | 187 | 2004 |
Rad51 paralogs remodel pre-synaptic Rad51 filaments to stimulate homologous recombination MRG Taylor, M Špírek, KR Chaurasiya, JD Ward, R Carzaniga, X Yu, ... Cell 162 (2), 271-286, 2015 | 165 | 2015 |
Structure and dynamics of the yeast SWR1-nucleosome complex O Willhoft, M Ghoneim, CL Lin, EYD Chua, M Wilkinson, Y Chaban, ... Science 362 (6411), 2018 | 155 | 2018 |
RNA looping by PTB: evidence using FRET and NMR spectroscopy and for a role in splicing repression R Lamichhane, GM Daubner, J Thomas-Crusells, SD Auweter, ... Biophysical Journal 98 (3), 72a-73a, 2010 | 140 | 2010 |
RNA folding dynamics by single-molecule fluorescence resonance energy transfer R Zhao, D Rueda Methods 49 (2), 112-117, 2009 | 134 | 2009 |
Cryo-EM structures of the eukaryotic replicative helicase bound to a translocation substrate FA Ali, L Renault, J Gannon, HL Gahlon, A Kotecha, JC Zhou, D Rueda, ... Nature Communications 7, 10708, 2016 | 129 | 2016 |
Single-molecule studies of group II intron ribozymes M Steiner, KS Karunatilaka, RKO Sigel, D Rueda Proceedings of the National Academy of Sciences 105 (37), 13853-13858, 2008 | 129 | 2008 |
DNA stretching induces Cas9 off-target activity MD Newton, BJ Taylor, RPC Driessen, L Roos, N Cvetesic, S Allyjaun, ... Nature structural & molecular biology 26 (3), 185-192, 2019 | 128 | 2019 |
Single-molecule FRET of protein–nucleic acid and protein–protein complexes: surface passivation and immobilization R Lamichhane, A Solem, W Black, D Rueda Methods 52 (2), 192-200, 2010 | 128 | 2010 |
Live cell imaging of single RNA molecules with fluorogenic Mango II arrays AD Cawte, PJ Unrau, DS Rueda Nature communications 11 (1), 1283, 2020 | 114 | 2020 |
Reaction pathway of the trans-acting hepatitis delta virus ribozyme: a conformational change accompanies catalysis MJB Pereira, DA Harris, D Rueda, NG Walter Biochemistry 41 (3), 730-740, 2002 | 110 | 2002 |
Single-molecule measurements of synthesis by DNA polymerase with base-pair resolution TD Christian, LJ Romano, D Rueda Proceedings of the National Academy of Sciences 106 (50), 21109-21114, 2009 | 105 | 2009 |
Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis DA Harris, D Rueda, NG Walter Biochemistry 41 (40), 12051-12061, 2002 | 98 | 2002 |
Single-molecule analysis of Mss116-mediated group II intron folding KS Karunatilaka, A Solem, AM Pyle, D Rueda Biophysical Journal 98 (3), 472a, 2010 | 97 | 2010 |
A rugged free energy landscape separates multiple functional RNA folds throughout denaturation MA Ditzler, D Rueda, J Mo, K Håkansson, NG Walter Nucleic acids research 36 (22), 7088-7099, 2008 | 97 | 2008 |
Molecular crowding accelerates ribozyme docking and catalysis BP Paudel, D Rueda Journal of the American Chemical Society 136 (48), 16700-16703, 2014 | 95 | 2014 |
Single-cell heterogeneity and cell-cycle-related viral gene bursts in the human leukaemia virus HTLV-1 MR Billman, D Rueda, CRM Bangham Wellcome open research 2, 2017 | 93 | 2017 |
Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells M Barbieri, SQ Xie, ET Triglia, AM Chiariello, S Bianco, I de Santiago, ... Nat Struct Mol Biol. 24, 515-524, 2017 | 87 | 2017 |