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Oliver Schwengers
Oliver Schwengers
Bioinformatics and Systems Biology, Justus Liebig University Giessen
在 computational.bio.uni-giessen.de 的电子邮件经过验证 - 首页
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Bakta: rapid & standardized annotation of bacterial genomes via alignment-free sequence identification
O Schwengers, L Jelonek, M Dieckmann, S Beyvers, J Blom, ...
bioRxiv, 2021
3332021
Detection and Characterization of ESBL-Producing Escherichia coli From Humans and Poultry in Ghana
L Falgenhauer, C Imirzalioglu, K Oppong, CW Akenten, B Hogan, ...
Frontiers in microbiology 9, 3358, 2019
1492019
Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein sequence-based replicon distribution scores
O Schwengers, P Barth, L Falgenhauer, T Hain, T Chakraborty, ...
Microbial genomics 6 (10), e000398, 2020
1342020
ReadXplorer 2—detailed read mapping analysis and visualization from one single source
R Hilker, KB Stadermann, O Schwengers, E Anisiforov, S Jaenicke, ...
Bioinformatics 32 (24), 3702-3708, 2016
842016
Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning
Y Ren, T Chakraborty, S Doijad, L Falgenhauer, J Falgenhauer, ...
Bioinformatics 38 (2), 325-334, 2022
792022
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher level analysis of closely related bacterial isolates
O Schwengers, A Hoek, M Fritzenwanker, L Falgenhauer, T Hain, ...
PLOS Computational Biology 16 (3), e1007134, 2020
662020
Multidrug-resistant and clinically relevant Gram-negative bacteria are present in German surface waters
L Falgenhauer, O Schwengers, J Schmiedel, C Baars, O Lambrecht, ...
Frontiers in microbiology 10, 2779, 2019
532019
The Regulatory Small RNA MarS Supports Virulence of Streptococcus pyogenes
R Pappesch, P Warnke, S Mikkat, J Normann, A Wisniewska-Kucper, ...
Scientific Reports 7 (1), 12241, 2017
412017
A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies
J Yu, J Blom, SP Glaeser, S Jaenicke, T Juhre, O Rupp, O Schwengers, ...
Journal of biotechnology 261, 2-9, 2017
372017
ReferenceSeeker: rapid determination of appropriate reference genomes
O Schwengers, T Hain, T Chakraborty, A Goesmann
Journal of Open Source Software 5 (46), 1994, 2020
222020
Multi-label classification for multi-drug resistance prediction of Escherichia coli
Y Ren, T Chakraborty, S Doijad, L Falgenhauer, J Falgenhauer, ...
Computational and Structural Biotechnology Journal 20, 1264-1270, 2022
172022
Bordetella pseudohinzii targets cilia and impairs tracheal cilia-driven transport in naturally acquired infection in mice
A Perniss, N Schmidt, C Gurtner, K Dietert, O Schwengers, M Weigel, ...
Scientific Reports 8 (1), 5681, 2018
162018
Split k-mer analysis compared to cgMLST and SNP-based core genome analysis for detecting transmission of vancomycin-resistant enterococci: results from routine outbreak …
F Maechler, A Weber, O Schwengers, F Schwab, L Denkel, M Behnke, ...
Microbial Genomics 9 (1), 000937, 2023
112023
Detection of blaCTX-M-27-encoding Escherichia coli ST206 in Nigerian poultry stocks
FA Ayeni, J Falgenhauer, J Schmiedel, O Schwengers, T Chakraborty, ...
Journal of Antimicrobial Chemotherapy 75 (10), 3070-3072, 2020
102020
Whole-genome sequences of clinical Enterobacter bugandensis isolates from Germany
J Falgenhauer, C Imirzalioglu, L Falgenhauer, Y Yao, AM Hauri, B Erath, ...
Microbiology Resource Announcements 8 (29), 10.1128/mra. 00465-19, 2019
92019
Acinetobacter stercoris sp. nov. isolated from output source of a mesophilic german biogas plant with anaerobic operating conditions
D Pulami, T Schauss, T Eisenberg, J Blom, O Schwengers, JK Bender, ...
Antonie Van Leeuwenhoek 114, 235-251, 2021
82021
Deep transfer learning enables robust prediction of antimicrobial resistance for novel antibiotics
Y Ren, T Chakraborty, S Doijad, L Falgenhauer, J Falgenhauer, ...
Antibiotics 11 (11), 1611, 2022
72022
Antidiabetic profiling of veramycins, polyketides accessible by biosynthesis, chemical synthesis and precursor-directed modification
D Dardić, N Böhringer, A Plaza, F Zubeil, J Pohl, S Sommer, L Padva, ...
Organic Chemistry Frontiers 9 (6), 1604-1615, 2022
62022
Hospital sanitary facilities on wards with high antibiotic exposure play an important role in maintaining a reservoir of resistant pathogens, even over many years
C Neidhöfer, E Sib, M Neuenhoff, O Schwengers, T Dummin, C Buechler, ...
Antimicrobial Resistance & Infection Control 12 (1), 33, 2023
42023
Phenotypic and genomic assessment of the potential threat of human spaceflight-relevant Staphylococcus capitis isolates under stress conditions
K Siems, K Runzheimer, A Rehm, O Schwengers, D Heidler von Heilborn, ...
Frontiers in Microbiology 13, 1007143, 2022
22022
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