| Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing DW Eyre, ML Cule, DJ Wilson, D Griffiths, A Vaughan, L O'Connor, CLC Ip, ... New England Journal of Medicine 369 (13), 1195-1205, 2013 | 732 | 2013 |
| MinION Analysis and Reference Consortium: Phase 1 data release and analysis CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ... F1000Research 4, 2015 | 343 | 2015 |
| Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data N Stoesser, EM Batty, DW Eyre, M Morgan, DH Wyllie, C Del Ojo Elias, ... Journal of Antimicrobial Chemotherapy 68 (10), 2234-2244, 2013 | 338 | 2013 |
| Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease BC Young, T Golubchik, EM Batty, R Fung, H Larner-Svensson, ... Proceedings of the National Academy of Sciences 109 (12), 4550-4555, 2012 | 319 | 2012 |
| Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7 (2), 10.1128/mbio. 02162-15, 2016 | 310 | 2016 |
| A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance DW Eyre, T Golubchik, NC Gordon, R Bowden, P Piazza, EM Batty, ... BMJ open 2 (3), e001124, 2012 | 297 | 2012 |
| Microevolutionary analysis of Clostridium difficile genomes to investigate transmission X Didelot, DW Eyre, M Cule, CLC Ip, MA Ansari, D Griffiths, A Vaughan, ... Genome biology 13, 1-13, 2012 | 233 | 2012 |
| Within-host evolution of Staphylococcus aureus during asymptomatic carriage T Golubchik, EM Batty, RR Miller, H Farr, BC Young, H Larner-Svensson, ... PloS one 8 (5), e61319, 2013 | 232 | 2013 |
| Improved workflows for high throughput library preparation using the transposome-based Nextera system S Lamble, E Batty, M Attar, D Buck, R Bowden, G Lunter, D Crook, ... BMC biotechnology 13, 1-10, 2013 | 169 | 2013 |
| Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus RG Everitt, X Didelot, EM Batty, RR Miller, K Knox, BC Young, R Bowden, ... Nature communications 5 (1), 3956, 2014 | 159 | 2014 |
| Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community … N Stoesser, A Giess, EM Batty, AE Sheppard, AS Walker, DJ Wilson, ... Antimicrobial agents and chemotherapy 58 (12), 7347-7357, 2014 | 147 | 2014 |
| Recombinational Switching of the Clostridium difficile S-Layer and a Novel Glycosylation Gene Cluster Revealed by Large-Scale Whole-Genome Sequencing KE Dingle, X Didelot, MA Ansari, DW Eyre, A Vaughan, D Griffiths, CLC Ip, ... The Journal of infectious diseases 207 (4), 675-686, 2013 | 106 | 2013 |
| Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes I Schulte, EM Batty, JCM Pole, KA Blood, S Mo, SL Cooke, C Ng, ... BMC genomics 13, 1-11, 2012 | 91 | 2012 |
| A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples EM Batty, THN Wong, A Trebes, K Argoud, M Attar, D Buck, CLC Ip, ... PloS one 8 (6), e66129, 2013 | 85 | 2013 |
| The role of tandem duplicator phenotype in tumour evolution in high‐grade serous ovarian cancer CKY Ng, SL Cooke, K Howe, S Newman, J Xian, J Temple, EM Batty, ... The Journal of pathology 226 (5), 703-712, 2012 | 80 | 2012 |
| Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi EM Batty, S Chaemchuen, S Blacksell, AL Richards, D Paris, R Bowden, ... PLoS neglected tropical diseases 12 (6), e0006566, 2018 | 54 | 2018 |
| Modernizing Medical Microbiology Informatics Group (MMMIG). 2016 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... Evolutionary history of the global emergence of the Escherichia coli …, 0 | 51 | |
| Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles KD Howarth, JCM Pole, JC Beavis, EM Batty, S Newman, GR Bignell, ... Genome research 21 (4), 525-534, 2011 | 44 | 2011 |
| Modernizing Medical Microbiology Informatics Group (MMMIG). 2016. Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131. mBio 7: e02162 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7, e02162, 0 | 44 | |
| Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a K Joonlasak, EM Batty, T Kochakarn, B Panthan, K Kümpornsin, ... Virus Research 292, 198233, 2021 | 39* | 2021 |
