Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 15192 | 2019 |
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013 | 8597 | 2013 |
PICRUSt2 for prediction of metagenome functions GM Douglas, VJ Maffei, JR Zaneveld, SN Yurgel, JR Brown, CM Taylor, ... Nature biotechnology 38 (6), 685-688, 2020 | 3881* | 2020 |
The human tumor microbiome is composed of tumor type–specific intracellular bacteria D Nejman, I Livyatan, G Fuks, N Gavert, Y Zwang, LT Geller, ... Science 368 (6494), 973-980, 2020 | 1411 | 2020 |
Microbiome helper: a custom and streamlined workflow for microbiome research AM Comeau, GM Douglas, MGI Langille MSystems 2 (1), 10.1128/msystems. 00127-16, 2017 | 534 | 2017 |
Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway R Singh, S Chandrashekharappa, SR Bodduluri, BV Baby, B Hegde, ... Nature communications 10 (1), 89, 2019 | 516 | 2019 |
IslandViewer: an integrated interface for computational identification and visualization of genomic islands MGI Langille, FSL Brinkman Bioinformatics 25 (5), 664-665, 2009 | 464 | 2009 |
Microbiome differential abundance methods produce different results across 38 datasets JT Nearing, GM Douglas, MG Hayes, J MacDonald, DK Desai, N Allward, ... Nature communications 13 (1), 342, 2022 | 453 | 2022 |
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa C Winstanley, MGI Langille, JL Fothergill, I Kukavica-Ibrulj, ... Genome research 19 (1), 12-23, 2009 | 417 | 2009 |
Microbial shifts in the aging mouse gut MGI Langille, CJ Meehan, JE Koenig, AS Dhanani, RA Rose, SE Howlett, ... Microbiome 2, 1-12, 2014 | 410 | 2014 |
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis BK Dhillon, MR Laird, JA Shay, GL Winsor, R Lo, F Nizam, SK Pereira, ... Nucleic acids research 43 (W1), W104-W108, 2015 | 321 | 2015 |
Detecting genomic islands using bioinformatics approaches MGI Langille, WWL Hsiao, FSL Brinkman Nature Reviews Microbiology 8 (5), 373-382, 2010 | 319 | 2010 |
Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches JT Nearing, GM Douglas, AM Comeau, MGI Langille PeerJ 6, e5364, 2018 | 315 | 2018 |
Evaluation of genomic island predictors using a comparative genomics approach MGI Langille, WWL Hsiao, FSL Brinkman BMC bioinformatics 9, 1-10, 2008 | 305 | 2008 |
Interactions in the microbiome: communities of organisms and communities of genes E Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko FEMS microbiology reviews 38 (1), 90-118, 2014 | 235 | 2014 |
Reporting guidelines for human microbiome research: the STORMS checklist C Mirzayi, A Renson, Genomic Standards Consortium, ... Nature medicine 27 (11), 1885-1892, 2021 | 223 | 2021 |
Predicting the functional potential of the microbiome from marker genes using PICRUSt GM Douglas, RG Beiko, MGI Langille Microbiome analysis: Methods and protocols, 169-177, 2018 | 205 | 2018 |
The association of virulence factors with genomic islands SJ Ho Sui, A Fedynak, WWL Hsiao, MGI Langille, FSL Brinkman PloS one 4 (12), e8094, 2009 | 186 | 2009 |
Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere RJ Wright, MGI Langille, TR Walker The ISME Journal 15 (3), 789-806, 2021 | 160 | 2021 |
GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework DH Parks, T Mankowski, S Zangooei, MS Porter, DG Armanini, DJ Baird, ... PloS one 8 (7), e69885, 2013 | 137 | 2013 |