Boruta – A System for Feature Selection MB Kursa, A Jankowski, WR Rudnicki Fundamenta Informaticae 101 (4), 271-285, 2010 | 693 | 2010 |
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression Y Ghavi-Helm, A Jankowski, S Meiers, RR Viales, JO Korbel, ... Nature genetics 51 (8), 1272-1282, 2019 | 322 | 2019 |
SOXE transcription factors form selective dimers on non-compact DNA motifs through multifaceted interactions between dimerization and high-mobility group domains YH Huang, A Jankowski, KSE Cheah, S Prabhakar, R Jauch Scientific Reports 5, 10398, 2015 | 87 | 2015 |
Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers A Jankowski, E Szczurek, R Jauch, J Tiuryn, S Prabhakar Genome Research 23 (8), 1307-1318, 2013 | 38 | 2013 |
TACO: a general-purpose tool for predicting cell-type-specific transcription factor dimers A Jankowski, S Prabhakar, J Tiuryn BMC Genomics 15 (1), 208, 2014 | 37 | 2014 |
The new SIMD implementation of the Smith-Waterman algorithm on Cell microprocessor WR Rudnicki, A Jankowski, A Modzelewski, A Piotrowski, A Zadrożny Fundamenta Informaticae 96 (1-2), 181-194, 2009 | 20 | 2009 |
Chromosome-level organization of the regulatory genome in the Drosophila nervous system G Mohana, J Dorier, X Li, M Mouginot, RC Smith, H Malek, M Leleu, ... Cell 186 (18), 3826-3844. e26, 2023 | 18 | 2023 |
DNA-mediated dimerization on a compact sequence signature controls enhancer engagement and regulation by FOXA1 X Wang, Y Srivastava, A Jankowski, V Malik, Y Wei, RCH del Rosario, ... Nucleic Acids Research 46 (11), 5470-5486, 2018 | 17 | 2018 |
Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data A Jankowski, J Tiuryn, S Prabhakar Bioinformatics 32 (16), 2419-2426, 2016 | 17 | 2016 |
Chromatin gene-gene loops support the cross-regulation of genes with related function T Pollex, R Marco-Ferreres, L Ciglar, Y Ghavi-Helm, A Rabinowitz, ... Molecular Cell 84 (5), 822-838. e8, 2024 | 4 | 2024 |
New enhancer-promoter interactions are gained during tissue differentiation and reflect changes in E/P activity T Pollex, A Rabinowitz, MC Gambetta, R Marco-Ferreres, RR Viales, ... BioRxiv, 2022.12. 07.519443, 2022 | 4 | 2022 |
Enhanceosome transcription factors preferentially dimerize with high mobility group proteins A Jankowski, P Obara, U Mathur, J Tiuryn BMC Systems Biology 10 (1), 14, 2016 | 4 | 2016 |
Enhancer–promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation T Pollex, A Rabinowitz, MC Gambetta, R Marco-Ferreres, RR Viales, ... Nature Genetics, 1-11, 2024 | 3 | 2024 |
The pZRS non-coding regulatory mutation resulting in triphalangeal thumb–polysyndactyly syndrome changes the pattern of local interactions JWP Potuijt, A Sowinska-Seidler, E Bukowska-Olech, P Nguyen, ... Molecular Genetics and Genomics 297 (5), 1343-1352, 2022 | 1 | 2022 |
BETWEEN YOUNG AND OLD BRAIN: HETEROGENEITY AND MORPHOLOGY OF MICROGLIA AFTER TRANSIENT DEPLETION AND REPOPULATION AT DIFFERENT AGES Z Łuczak-Sobotkowska, P Rosa, M Banqueri, N Ochocka, A Lenkiewicz, ... IBRO Neuroscience Reports 15, S114-S115, 2023 | | 2023 |
Tracking heterogeneity and morphology of microglia after transient depletion and repopulation ZM Luczak-Sobotkowska, P Rosa, M Banqueri, N Ochocka, A Jankowski, ... GLIA 71, E468-E468, 2023 | | 2023 |