Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities M Chiara, AM D’Erchia, C Gissi, C Manzari, A Parisi, N Resta, F Zambelli, ... Briefings in Bioinformatics 22 (2), 616-630, 2021 | 174 | 2021 |
Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity AM D'Erchia, A Atlante, G Gadaleta, G Pavesi, M Chiara, C De Virgilio, ... Mitochondrion 20, 13-21, 2015 | 168 | 2015 |
Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing E Picardi, DS Horner, M Chiara, R Schiavon, G Valle, G Pesole Nucleic acids research 38 (14), 4755-4767, 2010 | 159 | 2010 |
Metagenomics Reveals Dysbiosis and a Potentially Pathogenic N. flavescens Strain in Duodenum of Adult Celiac Patients V D'argenio, G Casaburi, V Precone, C Pagliuca, R Colicchio, ... The American journal of gastroenterology 111 (6), 879, 2016 | 132 | 2016 |
Whole transcriptome profiling of Late-Onset Alzheimer’s Disease patients provides insights into the molecular changes involved in the disease A Annese, C Manzari, C Lionetti, E Picardi, DS Horner, M Chiara, ... Scientific reports 8 (1), 4282, 2018 | 119 | 2018 |
CONSTANS imparts DNA sequence specificity to the histone fold NF-YB/NF-YC dimer N Gnesutta, RW Kumimoto, S Swain, M Chiara, C Siriwardana, DS Horner, ... The Plant Cell 29 (6), 1516-1532, 2017 | 112 | 2017 |
Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer F Conte, G Fiscon, M Chiara, T Colombo, L Farina, P Paci PLoS One 12 (2), e0171661, 2017 | 105 | 2017 |
Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS AM D’Erchia, A Gallo, C Manzari, S Raho, DS Horner, M Chiara, A Valletti, ... Scientific Reports 7 (1), 1-20, 2017 | 101 | 2017 |
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications G Formenti, A Rhie, J Balacco, B Haase, J Mountcastle, O Fedrigo, ... Genome biology 22 (1), 120, 2021 | 65 | 2021 |
Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity … M Chiara, M Caruso, AM D’Erchia, C Manzari, R Fraccalvieri, E Goffredo, ... Genome biology and evolution 7 (8), 2154-2172, 2015 | 60 | 2015 |
A novel group of IncQ1 plasmids conferring multidrug resistance M Oliva, R Monno, P D'Addabbo, G Pesole, AM Dionisi, M Scrascia, ... Plasmid 89, 22-26, 2017 | 51 | 2017 |
Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi M Chiara, F Fanelli, G Mule, AF Logrieco, G Pesole, JF Leslie, DS Horner, ... Genome Biology and Evolution 7 (11), 3062-3069, 2015 | 45 | 2015 |
Geographic population structure in Epstein-Barr virus revealed by comparative genomics M Chiara, C Manzari, C Lionetti, R Mechelli, E Anastasiadou, ... Genome Biology and Evolution 8 (11), 3284-3291, 2016 | 40 | 2016 |
Gene coexpression patterns during early development of the native Arabidopsis reproductive meristem: novel candidate developmental regulators and patterns of functional redundancy O Mantegazza, V Gregis, M Chiara, C Selva, G Leo, DS Horner, MM Kater The Plant Journal 79 (5), 861-877, 2014 | 37 | 2014 |
Targeted next-generation sequencing detects novel gene–phenotype associations and expands the mutational spectrum in cardiomyopathies C Forleo, AM D’Erchia, S Sorrentino, C Manzari, M Chiara, M Iacoviello, ... PloS one 12 (7), e0181842, 2017 | 36 | 2017 |
Comparative genomics suggests limited variability and similar evolutionary patterns between major clades of SARS-Cov-2 M Chiara, DS Horner, C Gissi, G Pesole BioRxiv, 2020.03. 30.016790, 2020 | 34 | 2020 |
Sox2 Controls Neural Stem Cell Self-Renewal Through a Fos-Centered Gene Regulatory Network M Pagin, M Pernebrink, S Giubbolini, C Barone, G Sambruni, Y Zhu, ... Stem Cells 39 (8), 1107-1119, 2021 | 30 | 2021 |
BPC transcription factors and a Polycomb Group protein confine the expression of the ovule identity gene SEEDSTICK in Arabidopsis R Petrella, F Caselli, I Roig‐Villanova, V Vignati, M Chiara, I Ezquer, ... The Plant Journal 102 (3), 582-599, 2020 | 30 | 2020 |
Comparative genomics reveals early emergence and biased spatiotemporal distribution of SARS-CoV-2 M Chiara, DS Horner, C Gissi, G Pesole Molecular biology and evolution 38 (6), 2547-2565, 2021 | 29 | 2021 |
Pilot study on circulating miRNA signature in children with obesity born small for gestational age and appropriate for gestational age F Marzano, MF Faienza, MF Caratozzolo, G Brunetti, M Chiara, DS Horner, ... Pediatric Obesity 13 (12), 803-811, 2018 | 29 | 2018 |