Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads F Bertels, OK Silander, M Pachkov, PB Rainey, E van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014 | 453 | 2014 |
Genomic Analysis of the Kiwifruit Pathogen Pseudomonas syringae pv. actinidiae Provides Insight into the Origins of an Emergent Plant Disease HC McCann, EHA Rikkerink, F Bertels, M Fiers, A Lu, J Rees-George, ... PLoS pathogens 9 (7), e1003503, 2013 | 291 | 2013 |
Global identification of yeast chromosome interactions using Genome conformation capture CDM Rodley, F Bertels, B Jones, JM O'Sullivan Fungal Genetics and Biology 46 (11), 879-886, 2009 | 148 | 2009 |
The perils of plenty: what are we going to do with all these genes? A Rodrigo, F Bertels, J Heled, R Noder, H Shearman, P Tsai Philosophical Transactions of the Royal Society of London B: Biological …, 2008 | 100 | 2008 |
Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria F Bertels, PB Rainey PLoS genetics 7 (6), e1002132, 2011 | 60 | 2011 |
Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. V. Insight into the Niche Specialist Fuzzy Spreader Compels Revision of the Model Pseudomonas Radiation GC Ferguson, F Bertels, PB Rainey Genetics 195 (4), 1319-1335, 2013 | 59 | 2013 |
Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens J Gallie, E Libby, F Bertels, P Remigi, CB Jendresen, GC Ferguson, ... PLoS biology 13 (3), e1002109, 2015 | 58 | 2015 |
Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity F Bertels, A Marzel, G Leventhal, V Mitov, J Fellay, HF Günthard, J Böni, ... Molecular biology and evolution 35 (1), 27-37, 2018 | 45 | 2018 |
Parallel evolution of HIV-1 in a long-term experiment F Bertels, C Leemann, KJ Metzner, RR Regoes Molecular biology and evolution 36 (11), 2400-2414, 2019 | 24 | 2019 |
Discovering complete quasispecies in bacterial genomes F Bertels, CS Gokhale, A Traulsen Genetics 206 (4), 2149-2157, 2017 | 21 | 2017 |
Curiosities of REPINs and RAYTs F Bertels, PB Rainey Mobile Genetic Elements 1 (4), 262-301, 2011 | 21 | 2011 |
Transposable elements promote the evolution of genome streamlining B van Dijk, F Bertels, L Stolk, N Takeuchi, PB Rainey Philosophical Transactions of the Royal Society B 377 (1842), 20200477, 2022 | 20* | 2022 |
Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25. J Gallie, F Bertels, P Remigi, GC Ferguson, S Nestmann, PB Rainey Molecular biology and evolution, 2019 | 19 | 2019 |
Estimating the mutational fitness effects distribution during early HIV infection E Bons, F Bertels, RR Regoes Virus evolution 4 (2), vey029, 2018 | 15 | 2018 |
Recombination of Virulence Genes in Divergent Acidovorax avenae Strains That Infect a Common Host Q Zeng, J Wang, F Bertels, PR Giordano, MI Chilvers, RB Huntley, ... Molecular Plant-Microbe Interactions 30 (10), 813-828, 2017 | 15 | 2017 |
Convergent evolution as an indicator for selection during acute HIV-1 infection F Bertels, KJ Metzner, RR Regoes PCI Evolutionary Biology, 2018 | 14 | 2018 |
Identification and characterization of domesticated bacterial transposases F Bertels, J Gallie, PB Rainey Genome Biology and Evolution 9 (8), 2110-2121, 2017 | 12 | 2017 |
How sequence populations persist inside bacterial genomes HJ Park, CS Gokhale, F Bertels Genetics 217 (4), iyab027, 2021 | 11 | 2021 |
Stepwise Evolution of E. coli C and ΦX174 Reveals Unexpected Lipopolysaccharide (LPS) Diversity J Romeyer Dherbey, L Parab, J Gallie, F Bertels Molecular Biology and Evolution 40 (7), msad154, 2023 | 8* | 2023 |
Ancient Darwinian replicators nested within eubacterial genomes F Bertels, PB Rainey BioEssays 45 (2), 2200085, 2023 | 5 | 2023 |