Phenotypic switching in gene regulatory networks P Thomas, N Popović, R Grima Proceedings of the National Academy of Sciences 111 (19), 6994-6999, 2014 | 165 | 2014 |
How accurate are the nonlinear chemical Fokker-Planck and chemical Langevin equations? R Grima, P Thomas, AV Straube The Journal of chemical physics 135 (8), 084103, 2011 | 144 | 2011 |
The slow-scale linear noise approximation: an accurate, reduced stochastic description of biochemical networks under timescale separation conditions P Thomas, AV Straube, R Grima BMC systems biology 6 (1), 39, 2012 | 126 | 2012 |
bayNorm: Bayesian gene expression recovery, imputation and normalization for single-cell RNA-sequencing data W Tang, F Bertaux, P Thomas, C Stefanelli, M Saint, S Marguerat, ... Bioinformatics 36 (4), 1174-1181, 2020 | 104 | 2020 |
Stochastic simulation of biomolecular networks in dynamic environments M Voliotis, P Thomas, R Grima, CG Bowsher PLoS computational biology 12 (6), e1004923, 2016 | 85 | 2016 |
Sources, propagation and consequences of stochasticity in cellular growth P Thomas, G Terradot, V Danos, AY Weiße Nature Communications 9 (1), 4528, 2018 | 83 | 2018 |
Inference for stochastic chemical kinetics using moment equations and system size expansion F Fröhlich, P Thomas, A Kazeroonian, FJ Theis, R Grima, J Hasenauer PLoS computational biology 12 (7), e1005030, 2016 | 81 | 2016 |
Communication: Limitations of the stochastic quasi-steady-state approximation in open biochemical reaction networks P Thomas, AV Straube, R Grima The Journal of chemical physics 135 (18), 181103, 2011 | 63 | 2011 |
Rigorous elimination of fast stochastic variables from the linear noise approximation using projection operators P Thomas, R Grima, AV Straube Physical Review E 86 (4), 041110, 2012 | 62 | 2012 |
Signatures of nonlinearity in single cell noise-induced oscillations P Thomas, AV Straube, J Timmer, C Fleck, R Grima Journal of theoretical biology 335, 222-234, 2013 | 60 | 2013 |
Intrinsic and extrinsic noise of gene expression in lineage trees P Thomas Scientific Reports 9 (1), 474, 2019 | 59 | 2019 |
Intrinsic noise analyzer: a software package for the exploration of stochastic biochemical kinetics using the system size expansion P Thomas, H Matuschek, R Grima PloS one 7 (6), e38518, 2012 | 59 | 2012 |
Cell size control driven by the circadian clock and environment in cyanobacteria BMC Martins, AK Tooke, P Thomas, JCW Locke Proceedings of the National Academy of Sciences 115 (48), E11415-E11424, 2018 | 52 | 2018 |
Making sense of snapshot data: ergodic principle for clonal cell populations P Thomas Journal of The Royal Society Interface 14 (136), 20170467, 2017 | 51 | 2017 |
How reliable is the linear noise approximation of gene regulatory networks? P Thomas, H Matuschek, R Grima BMC genomics 14 (Suppl 4), S5, 2013 | 51 | 2013 |
Mycobacteria modify their cell size control under sub-optimal carbon sources M Priestman, P Thomas, BD Robertson, V Shahrezaei Frontiers in Cell and Developmental Biology 5, 64, 2017 | 49 | 2017 |
Stochastic theory of large-scale enzyme-reaction networks: Finite copy number corrections to rate equation models P Thomas, AV Straube, R Grima The Journal of chemical physics 133 (19), 195101, 2010 | 45 | 2010 |
Stochastic modelling reveals mechanisms of metabolic heterogeneity MK Tonn, P Thomas, M Barahona, DA Oyarzún Communications biology 2 (1), 108, 2019 | 42 | 2019 |
Approximate probability distributions of the master equation P Thomas, R Grima Physical Review E 92 (1), 012120, 2015 | 41 | 2015 |
Bounding the stationary distributions of the chemical master equation via mathematical programming J Kuntz, P Thomas, GB Stan, M Barahona The Journal of Chemical Physics 151 (3), 034109, 2019 | 35 | 2019 |