Comprehensive molecular characterization of human colon and rectal cancer DM Muzny, MN Bainbridge, K Chang, HH Dinh, JA Drummond, G Fowler, ... Nature 487 (7407), 330-337, 2012 | 7051 | 2012 |
Comprehensive molecular profiling of lung adenocarcinoma TCGA Network Nature 511 (7511), 543-550, 2014 | 3572* | 2014 |
Comprehensive genomic characterization of squamous cell lung cancers TCGA Network Nature 489 (7417), 519-525, 2012 | 3479 | 2012 |
Comprehensive genomic characterization of head and neck squamous cell carcinomas TCGA Network Nature 517 (7536), 576-582, 2015 | 2580 | 2015 |
Integrated Genomic Characterization of Papillary Thyroid Carcinoma TCGA Network Cell 159 (3), 676-90, 2014 | 2296* | 2014 |
MapSplice: accurate mapping of RNA-seq reads for splice junction discovery K Wang, D Singh, Z Zeng, SJ Coleman, Y Huang, GL Savich, X He, ... Nucleic Acids Research 38 (18), e178-e178, 2010 | 1201 | 2010 |
Efficient mining of frequent subgraphs in the presence of isomorphism J Huan, W Wang, J Prins International Conference on Data Mining, 549, 2003 | 901 | 2003 |
Integrating Non-Interfering Versions of Programs S Horwitz, J Prins, T Reps Transactions on Programming Languages and Systems (TOPLAS) 11 (3), 345-387, 1989 | 626 | 1989 |
Systematic evaluation of spliced aligners for RNA-seq data PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, ... Nature Methods, 1185–1191, 2013 | 562 | 2013 |
Spin: mining maximal frequent subgraphs from graph databases J Huan, W Wang, J Prins, J Yang Proceedings of the tenth ACM SIGKDD international conference on Knowledge …, 2004 | 484 | 2004 |
Fast N-body Simulation with CUDA L Nyland, M Harris, J Prins GPU Gems 3, 677-696, 2007 | 468* | 2007 |
Characterization of HPV and host genome interactions in primary head and neck cancers M Parfenov, CS Pedamallu, N Gehlenborg, SS Freeman, L Danilova, ... Proceedings of the National Academy of Sciences 111 (43), 15544-15549, 2014 | 388 | 2014 |
UTS: An unbalanced tree search benchmark S Olivier, J Huan, J Liu, J Prins, J Dinan, P Sadayappan, CW Tseng Languages and Compilers for Parallel Computing: 19th International Workshop …, 2007 | 242 | 2007 |
On the adequacy of program dependence graphs for representing programs S Horwitz, J Prins, T Reps Proceedings of the 15th ACM SIGPLAN-SIGACT symposium on Principles of …, 1988 | 209 | 1988 |
Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects JM Simon, KE Hacker, D Singh, AR Brannon, JS Parker, M Weiser, TH Ho, ... Genome Research 24 (2), 241-250, 2014 | 194 | 2014 |
Single-cell transcriptomics reconstructs fate conversion from fibroblast to cardiomyocyte Z Liu, L Wang, JD Welch, H Ma, Y Zhou, HR Vaseghi, S Yu, JB Wall, ... Nature 551 (7678), 100–104, 2017 | 188 | 2017 |
Mining protein family specific residue packing patterns from protein structure graphs J Huan, W Wang, D Bandyopadhyay, J Snoeyink, J Prins, A Tropsha Proceedings of the eighth annual international conference on Research in …, 2004 | 180 | 2004 |
SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data JD Welch, AJ Hartemink, JF Prins Genome Biology 17 (106), 15, 2016 | 179 | 2016 |
DiffSplice: the genome-wide detection of differential splicing events with RNA-seq Y Hu, Y Huang, Y Du, CF Orellana, D Singh, AR Johnson, A Monroy, ... Nucleic Acids Research 41 (2), e39-e39, 2013 | 169 | 2013 |
MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics JD Welch, AJ Hartemink, JF Prins Genome Biology 18 (138), 2017 | 147 | 2017 |